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b bifidum atcc 29521  (ATCC)


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    ATCC b bifidum atcc 29521
    Phylogenomic tree showing the relationships between different <t>Bifidobacterium</t> <t>bifidum</t> strains. The tree was created from the alignment of 769 single-copy conserved protein families, using the maximum likelihood method in IQTREE (“-m TEST” mode), with the use of the approximate likelihood ratio test (aLRT) as the branch support test. The outgroup (the proteome of B. longum subsp. longum JCM 1217) was removed to improve branch resolution. Colored nodes indicate different branch support values ranges. Columns from the right side represent metadata fields reported by the respective NCBI Assembly/Biosample accession. The branch with the red asterisk (“*”) is where the 900791 strain is located.
    B Bifidum Atcc 29521, supplied by ATCC, used in various techniques. Bioz Stars score: 97/100, based on 350 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/b bifidum atcc 29521/product/ATCC
    Average 97 stars, based on 350 article reviews
    b bifidum atcc 29521 - by Bioz Stars, 2026-02
    97/100 stars

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    1) Product Images from "Genomic analysis of the probiotic candidate Bifidobacterium bifidum strain 900791 in the context of the B. bifidum pangenome"

    Article Title: Genomic analysis of the probiotic candidate Bifidobacterium bifidum strain 900791 in the context of the B. bifidum pangenome

    Journal: bioRxiv

    doi: 10.1101/2025.11.10.687612

    Phylogenomic tree showing the relationships between different Bifidobacterium bifidum strains. The tree was created from the alignment of 769 single-copy conserved protein families, using the maximum likelihood method in IQTREE (“-m TEST” mode), with the use of the approximate likelihood ratio test (aLRT) as the branch support test. The outgroup (the proteome of B. longum subsp. longum JCM 1217) was removed to improve branch resolution. Colored nodes indicate different branch support values ranges. Columns from the right side represent metadata fields reported by the respective NCBI Assembly/Biosample accession. The branch with the red asterisk (“*”) is where the 900791 strain is located.
    Figure Legend Snippet: Phylogenomic tree showing the relationships between different Bifidobacterium bifidum strains. The tree was created from the alignment of 769 single-copy conserved protein families, using the maximum likelihood method in IQTREE (“-m TEST” mode), with the use of the approximate likelihood ratio test (aLRT) as the branch support test. The outgroup (the proteome of B. longum subsp. longum JCM 1217) was removed to improve branch resolution. Colored nodes indicate different branch support values ranges. Columns from the right side represent metadata fields reported by the respective NCBI Assembly/Biosample accession. The branch with the red asterisk (“*”) is where the 900791 strain is located.

    Techniques Used:

    Pangenome analysis of B. bifidum utilizing 229 high-quality genomes (including 900791 strain). A: Ortholog conservation heatmap for the genomes according to their geographical origin, clusterized their ortholog profile. B: Pangenome accumulation curve suggests that the pangenome for B. bifidum is open (gamma value = 0.21512, according to Power Law equation). C: Analysis for the Log2 ratios of the percentage of core/near-core (>= 95% prevalence) versus accessory genes (< 95% prevalence) genes for each COG category among pangenomes “(@” = no COG category). COG category descriptions are available on the COG Database website ( https://www.ncbi.nlm.nih.gov/research/cog ).
    Figure Legend Snippet: Pangenome analysis of B. bifidum utilizing 229 high-quality genomes (including 900791 strain). A: Ortholog conservation heatmap for the genomes according to their geographical origin, clusterized their ortholog profile. B: Pangenome accumulation curve suggests that the pangenome for B. bifidum is open (gamma value = 0.21512, according to Power Law equation). C: Analysis for the Log2 ratios of the percentage of core/near-core (>= 95% prevalence) versus accessory genes (< 95% prevalence) genes for each COG category among pangenomes “(@” = no COG category). COG category descriptions are available on the COG Database website ( https://www.ncbi.nlm.nih.gov/research/cog ).

    Techniques Used:

    Comparative analysis of Glycosyl hydrolases (GHs) profile analysis of B. bifidum utilizing 229 high-quality genomes (including 900791 strain), characterized by country of origin. HMM profiles from the dbCAN version 15 were used against the ORFomes of 229 B. bifidum strains and clusterized (by euclidean distances) in a heatmap (A) and in a PCA dotplot showing the most important loadings influencing the dispersion of the genomes by their GH content (B).
    Figure Legend Snippet: Comparative analysis of Glycosyl hydrolases (GHs) profile analysis of B. bifidum utilizing 229 high-quality genomes (including 900791 strain), characterized by country of origin. HMM profiles from the dbCAN version 15 were used against the ORFomes of 229 B. bifidum strains and clusterized (by euclidean distances) in a heatmap (A) and in a PCA dotplot showing the most important loadings influencing the dispersion of the genomes by their GH content (B).

    Techniques Used: Dispersion



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    b bifidum atcc 29521  (ATCC)
    97
    ATCC b bifidum atcc 29521
    Phylogenomic tree showing the relationships between different <t>Bifidobacterium</t> <t>bifidum</t> strains. The tree was created from the alignment of 769 single-copy conserved protein families, using the maximum likelihood method in IQTREE (“-m TEST” mode), with the use of the approximate likelihood ratio test (aLRT) as the branch support test. The outgroup (the proteome of B. longum subsp. longum JCM 1217) was removed to improve branch resolution. Colored nodes indicate different branch support values ranges. Columns from the right side represent metadata fields reported by the respective NCBI Assembly/Biosample accession. The branch with the red asterisk (“*”) is where the 900791 strain is located.
    B Bifidum Atcc 29521, supplied by ATCC, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/b bifidum atcc 29521/product/ATCC
    Average 97 stars, based on 1 article reviews
    b bifidum atcc 29521 - by Bioz Stars, 2026-02
    97/100 stars
    		  Buy from Supplier
    b bifidum atcc  (ATCC)
    97
    ATCC b bifidum atcc
    Phylogenomic tree showing the relationships between different <t>Bifidobacterium</t> <t>bifidum</t> strains. The tree was created from the alignment of 769 single-copy conserved protein families, using the maximum likelihood method in IQTREE (“-m TEST” mode), with the use of the approximate likelihood ratio test (aLRT) as the branch support test. The outgroup (the proteome of B. longum subsp. longum JCM 1217) was removed to improve branch resolution. Colored nodes indicate different branch support values ranges. Columns from the right side represent metadata fields reported by the respective NCBI Assembly/Biosample accession. The branch with the red asterisk (“*”) is where the 900791 strain is located.
    B Bifidum Atcc, supplied by ATCC, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/b bifidum atcc/product/ATCC
    Average 97 stars, based on 1 article reviews
    b bifidum atcc - by Bioz Stars, 2026-02
    97/100 stars
    		  Buy from Supplier

    Image Search Results


    Phylogenomic tree showing the relationships between different Bifidobacterium bifidum strains. The tree was created from the alignment of 769 single-copy conserved protein families, using the maximum likelihood method in IQTREE (“-m TEST” mode), with the use of the approximate likelihood ratio test (aLRT) as the branch support test. The outgroup (the proteome of B. longum subsp. longum JCM 1217) was removed to improve branch resolution. Colored nodes indicate different branch support values ranges. Columns from the right side represent metadata fields reported by the respective NCBI Assembly/Biosample accession. The branch with the red asterisk (“*”) is where the 900791 strain is located.

    Journal: bioRxiv

    Article Title: Genomic analysis of the probiotic candidate Bifidobacterium bifidum strain 900791 in the context of the B. bifidum pangenome

    doi: 10.1101/2025.11.10.687612

    Figure Lengend Snippet: Phylogenomic tree showing the relationships between different Bifidobacterium bifidum strains. The tree was created from the alignment of 769 single-copy conserved protein families, using the maximum likelihood method in IQTREE (“-m TEST” mode), with the use of the approximate likelihood ratio test (aLRT) as the branch support test. The outgroup (the proteome of B. longum subsp. longum JCM 1217) was removed to improve branch resolution. Colored nodes indicate different branch support values ranges. Columns from the right side represent metadata fields reported by the respective NCBI Assembly/Biosample accession. The branch with the red asterisk (“*”) is where the 900791 strain is located.

    Article Snippet: Using GTDBtk as a second approach, the identity of this genome as B. bifidum was confirmed by ANI against the genome of B. bifidum ATCC 29521 (GCF_001025135.1, ANI = 98.86%).

    Techniques:

    Pangenome analysis of B. bifidum utilizing 229 high-quality genomes (including 900791 strain). A: Ortholog conservation heatmap for the genomes according to their geographical origin, clusterized their ortholog profile. B: Pangenome accumulation curve suggests that the pangenome for B. bifidum is open (gamma value = 0.21512, according to Power Law equation). C: Analysis for the Log2 ratios of the percentage of core/near-core (>= 95% prevalence) versus accessory genes (< 95% prevalence) genes for each COG category among pangenomes “(@” = no COG category). COG category descriptions are available on the COG Database website ( https://www.ncbi.nlm.nih.gov/research/cog ).

    Journal: bioRxiv

    Article Title: Genomic analysis of the probiotic candidate Bifidobacterium bifidum strain 900791 in the context of the B. bifidum pangenome

    doi: 10.1101/2025.11.10.687612

    Figure Lengend Snippet: Pangenome analysis of B. bifidum utilizing 229 high-quality genomes (including 900791 strain). A: Ortholog conservation heatmap for the genomes according to their geographical origin, clusterized their ortholog profile. B: Pangenome accumulation curve suggests that the pangenome for B. bifidum is open (gamma value = 0.21512, according to Power Law equation). C: Analysis for the Log2 ratios of the percentage of core/near-core (>= 95% prevalence) versus accessory genes (< 95% prevalence) genes for each COG category among pangenomes “(@” = no COG category). COG category descriptions are available on the COG Database website ( https://www.ncbi.nlm.nih.gov/research/cog ).

    Article Snippet: Using GTDBtk as a second approach, the identity of this genome as B. bifidum was confirmed by ANI against the genome of B. bifidum ATCC 29521 (GCF_001025135.1, ANI = 98.86%).

    Techniques:

    Comparative analysis of Glycosyl hydrolases (GHs) profile analysis of B. bifidum utilizing 229 high-quality genomes (including 900791 strain), characterized by country of origin. HMM profiles from the dbCAN version 15 were used against the ORFomes of 229 B. bifidum strains and clusterized (by euclidean distances) in a heatmap (A) and in a PCA dotplot showing the most important loadings influencing the dispersion of the genomes by their GH content (B).

    Journal: bioRxiv

    Article Title: Genomic analysis of the probiotic candidate Bifidobacterium bifidum strain 900791 in the context of the B. bifidum pangenome

    doi: 10.1101/2025.11.10.687612

    Figure Lengend Snippet: Comparative analysis of Glycosyl hydrolases (GHs) profile analysis of B. bifidum utilizing 229 high-quality genomes (including 900791 strain), characterized by country of origin. HMM profiles from the dbCAN version 15 were used against the ORFomes of 229 B. bifidum strains and clusterized (by euclidean distances) in a heatmap (A) and in a PCA dotplot showing the most important loadings influencing the dispersion of the genomes by their GH content (B).

    Article Snippet: Using GTDBtk as a second approach, the identity of this genome as B. bifidum was confirmed by ANI against the genome of B. bifidum ATCC 29521 (GCF_001025135.1, ANI = 98.86%).

    Techniques: Dispersion